BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB027E04LP1|AL428734
(892 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1518 1201 0.0
3x_Contig784 262 1e-69
>3x_Contig1518
Length = 11021
Score = 1201 bits (606), Expect = 0.0
Identities = 634/640 (99%), Gaps = 5/640 (0%)
Strand = Plus / Minus
Query: 1 gatccttattggaatcggtgtggcacctttgttgtactctttatggtcgctgttattcgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 gatccttattggaatcggtgtggcacctttgttgtactctttatggtcgctgttattcgt 808
Query: 61 gtggtatttcaaagaaagtctaaccaaaaacaaattcatcagtttcattttcgcatacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 gtggtatttcaaagaaagtctaaccaaaaacaaattcatcagtttcattttcgcatacac 748
Query: 121 atgttgtgctaccgttacttattctgcattgatcattggtgatcacggaatggatatatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 atgttgtgctaccgttacttattctgcattgatcattggtgatcacggaatggatatatt 688
Query: 181 caagtccatcagacctttatacttggcagtcacctctccaaagggcttgcagtcattaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 caagtccatcagacctttatacttggcagtcacctctccaaagggcttgcagtcattaaa 628
Query: 241 agacgaacgtactgtcttgtctgaaaagattaatgaaatcgtgaacgaatatggaccaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 agacgaacgtactgtcttgtctgaaaagattaatgaaatcgtgaacgaatatggaccaag 568
Query: 301 acttttccccgatttcaatgtcgaaacttttgcaagttatgctactggccattcttcaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 acttttccccgatttcaatgtcgaaacttttgcaagttatgctactggccattcttcaac 508
Query: 361 agatgaacagctcgaagaacaagaggatagaaagacaatggaattaaagagaagaagaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 agatgaacagctcgaagaacaagaggatagaaagacaatggaattaaagagaagaagaag 448
Query: 421 actagcaaagttgaagaaaagattcaaagagcaagaggagaaacaggatgcggattccag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 actagcaaagttgaagaaaagattcaaagagcaagaggagaaacaggatgcggattccag 388
Query: 481 tgctccaactagtgcaaaaccagaaagtgccagtacaactacaacggccgccacaacaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgctccaactagtgcaaaaccagaaagtgccagtacaactacaacggccgccacaacaga 328
Query: 541 cgacgaaagtgatgccatttcaatgattaacagtgataactctctatcgaatattcctat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cgacgaaagtgatgccatttcaatgattaacagtgataactctctatcgaatattcctat 268
Query: 601 ttt---ctcaaacagagaaaga-tctacg-tcatcgacaa 635
||| ||||||||||||||| |||||| ||||||||||
Sbjct: 267 tttttcttcaaacagagaaagagtctacgttcatcgacaa 228
>3x_Contig784
Length = 1678
Score = 262 bits (132), Expect = 1e-69
Identities = 156/160 (97%), Gaps = 3/160 (1%)
Strand = Plus / Plus
Query: 736 actcgattgatgactttgtgattt-tgtactaattactatt-gtacaatct-ttttaaca 792
|||||||||||||||||||||||| ||||||||| |||||| ||||||||| ||||||||
Sbjct: 1 actcgattgatgactttgtgatttgtgtactaataactatttgtacaatctcttttaaca 60
Query: 793 cattatacactgaaataaataaatctacaactaaccgtaataattacatgtattagacag 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cattatacactgaaataaataaatctacaactaaccgtaataattacatgtattagacag 120
Query: 853 atttctgtttggtcaggatggttctttgaacagttacgtt 892
||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atttctgtttggtcaggatggttctttgaacagttacgtt 160
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8234
Number of Sequences: 1807
Number of extensions: 8234
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 2
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)